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    LOC4340355 UDP-galactose/UDP-glucose transporter 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340355, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4340355
    Gene description
    UDP-galactose/UDP-glucose transporter 7
    Locus tag
    OSNPB_060188100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 11.3), flower buds (RPKM 8.3) and 5 other tissues See more
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    Genomic context

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    See LOC4340355 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (4443006..4446518, complement)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene serine/arginine-rich splicing factor RSZ21A-like Neighboring gene cyclic nucleotide-gated ion channel 17 Neighboring gene glutamate receptor 2.8 Neighboring gene uncharacterized LOC9270896

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UDP-galactose transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables UDP-glucose transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UDP-galactose/UDP-glucose transporter 7
    Names
    OSJNBb0005A05.18
    Os06g0188100
    P0470C02.29
    putative UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter
    putative UDP-sugar transporter DDB_G0278631

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      4443006..4446518 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787928.2 → XP_015643414.1  UDP-galactose/UDP-glucose transporter 7

      UniProtKB/TrEMBL
      A0A0P0WTD1, A2YA49, Q5SMU1, Q69KL6
      Conserved Domains (1) summary
      COG5070
      Location:14 → 312
      VRG4; Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
    Nucleotide Protein
    Heading Accession and Version

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