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    LOC4328994 proteinaceous RNase P 1, chloroplastic/mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328994, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328994
    Gene description
    proteinaceous RNase P 1, chloroplastic/mitochondrial
    Locus tag
    OSNPB_020273800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4328994 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (10010462..10014767, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (9981495..9985920, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355328 Neighboring gene uncharacterized LOC107280188 Neighboring gene TOM1-like protein 9 Neighboring gene uncharacterized LOC4328995 Neighboring gene RNA-binding protein Raly

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribonuclease P activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA 5'-leader removal IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proteinaceous RNase P 1, chloroplastic/mitochondrial
    Names
    Os02g0273800
    P0413A11.14-1
    putative pentatricopeptide (PPR) repeat-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      10010462..10014767 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767629.3 → XP_015623115.2  proteinaceous RNase P 1, chloroplastic/mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0A0P0VHE9, F1SZ39, Q6K7U1
      Conserved Domains (3) summary
      sd00004
      Location:353 → 382
      PPR; PPR repeat [structural motif]
      pfam17177
      Location:205 → 475
      PPR_long; Pentacotripeptide-repeat region of PROPR
      cl20439
      Location:515 → 742
      RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain

    2. XM_015767630.3 → XP_015623116.2  proteinaceous RNase P 1, chloroplastic/mitochondrial isoform X2

      UniProtKB/TrEMBL
      A0A0P0VHE9, F1SZ39, Q6K7U1
      Conserved Domains (3) summary
      sd00004
      Location:353 → 382
      PPR; PPR repeat [structural motif]
      cl20439
      Location:515 → 662
      RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain
      cl23646
      Location:205 → 475
      PPR_3; Pentatricopeptide repeat domain
    Nucleotide Protein
    Heading Accession and Version

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