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    LOC4333474 B3 domain-containing protein Os03g0622200-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333474, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4333474
    Gene description
    B3 domain-containing protein Os03g0622200-like
    Locus tag
    OSNPB_030622200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_11768
    Expression
    Broad expression in mature seeds (RPKM 1.3), flowers (RPKM 0.8) and 6 other tissues See more
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    Genomic context

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    See LOC4333474 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (24474559..24477758)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (23613706..23616328)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112938321 Neighboring gene B3 domain-containing protein Os03g0622100-like Neighboring gene uncharacterized LOC4333475 Neighboring gene uncharacterized LOC136355738 Neighboring gene uncharacterized LOC4333478 Neighboring gene probable sugar phosphate/phosphate translocator At4g32390

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    B3 domain-containing protein Os03g0622200
    Names
    LOC_Os03g42430
    OSJNBb0111B07.22

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417714.1 → NP_001404643.1  B3 domain-containing protein Os03g0622200

      Status: VALIDATED

      Source sequence(s)
      AK108660, AP014959
      UniProtKB/Swiss-Prot
      A0A0P0W086, Q10GM3
      UniProtKB/TrEMBL
      B8AML5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      24474559..24477758
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066308162.1 → XP_066164259.1  B3 domain-containing protein Os03g0622200 isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10GM3.1 GenPept UniProtKB/Swiss-Prot:Q10GM3

    Gene LinkOut

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