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    LOC4325480 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325480, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325480
    Gene description
    protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1
    Locus tag
    OSNPB_010141100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 115.1), roots after flowering (RPKM 98.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (2223303..2230362, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2215643..2222831, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene putative AP2/ERF and B3 domain-containing protein Os01g0140700 Neighboring gene nucleolar protein 58-like Neighboring gene AP2/ERF and B3 domain-containing protein Os01g0141000-like Neighboring gene protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 Neighboring gene protein root UVB sensitive 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endosomal transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vacuole organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1
    Names
    AAA-ATPase-like protein
    Os01g0141100
    P0480E02.34
    putative p60 katanin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      2223303..2230362 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765883.3 → XP_015621369.1  protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1

      UniProtKB/TrEMBL
      A2ZP36, Q8LKV4
      Conserved Domains (5) summary
      smart00382
      Location:162 → 298
      AAA; ATPases associated with a variety of cellular activities
      cd02678
      Location:4 → 75
      MIT_VPS4; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
      pfam00004
      Location:167 → 296
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam09336
      Location:366 → 430
      Vps4_C; Vps4 C terminal oligomerization domain
      cl21455
      Location:131 → 185
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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