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    LOC4335115 probable inorganic phosphate transporter 1-4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335115, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4335115
    Gene description
    probable inorganic phosphate transporter 1-4
    Locus tag
    OSNPB_040186400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PT1; PT4; OsPT1; OsPT4; PHT1-2; PHT1-4; OsPht1;4; OsJ_013378
    Expression
    Biased expression in roots before flowering (RPKM 32.3), leaves after flowering (RPKM 12.3) and 2 other tissues See more
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    Genomic context

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    See LOC4335115 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (5938796..5941838)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (5846254..5849258)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280594 Neighboring gene uncharacterized LOC136356308 Neighboring gene putative inorganic phosphate transporter 1-13 Neighboring gene uncharacterized LOC112938631

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphate ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable inorganic phosphate transporter 1-4
    Names
    H(+)/Pi cotransporter
    LOC_Os04g10750
    OSJNBb0003A12.10
    phosphate transporter 4
    putative phosphate transporter OsPT4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402342.1 → NP_001389271.1  probable inorganic phosphate transporter 1-4

      Status: VALIDATED

      Source sequence(s)
      AK063990, AK101380
      UniProtKB/Swiss-Prot
      A0A0P0W742, Q01MW8, Q7XRH9, Q8H6H2, Q8RV80, Q945E6, Q9LKL5
      UniProtKB/TrEMBL
      A2XQT8

    2. NM_001402343.1 → NP_001389272.1  probable inorganic phosphate transporter 1-4

      Status: VALIDATED

      Source sequence(s)
      AK063990, AK101380, CI777311
      UniProtKB/Swiss-Prot
      A0A0P0W742, Q01MW8, Q7XRH9, Q8H6H2, Q8RV80, Q945E6, Q9LKL5
      UniProtKB/TrEMBL
      A2XQT8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      5938796..5941838
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781331.3 → XP_015636817.1  probable inorganic phosphate transporter 1-4 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0W742, Q01MW8, Q7XRH9, Q8H6H2, Q8RV80, Q945E6, Q9LKL5
      UniProtKB/TrEMBL
      A2XQT8
      Conserved Domains (1) summary
      TIGR00887
      Location:10 → 514
      2A0109; phosphate:H+ symporter

    2. XM_015781329.3 → XP_015636815.1  probable inorganic phosphate transporter 1-4 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0W742, Q01MW8, Q7XRH9, Q8H6H2, Q8RV80, Q945E6, Q9LKL5
      UniProtKB/TrEMBL
      A2XQT8
      Conserved Domains (1) summary
      TIGR00887
      Location:10 → 514
      2A0109; phosphate:H+ symporter
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H6H2.1 GenPept UniProtKB/Swiss-Prot:Q8H6H2

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