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    LOC4339720 sister chromatid cohesion 1 protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339720, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4339720
    Gene description
    sister chromatid cohesion 1 protein 1
    Locus tag
    OSNPB_050580500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 4.9), flowers (RPKM 4.3) and 6 other tissues See more
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    Genomic context

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    See LOC4339720 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (29075016..29082417)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (28889503..28896941)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene auxilin-like protein 1 Neighboring gene glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic-like Neighboring gene uncharacterized LOC136356549 Neighboring gene uncharacterized LOC4339723 Neighboring gene uncharacterized LOC107281087 Neighboring gene uncharacterized LOC9271594 Neighboring gene uncharacterized LOC136356701

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The rice OsRad21-4, an orthologue of yeast Rec8 protein, is required for efficient meiosis. Zhang L, et al. Plant Mol Biol, 2006 Mar. PMID 16525890
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in meiotic sister chromatid cohesion, centromeric IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cohesin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sister chromatid cohesion 1 protein 1
    Names
    Os05g0580500
    Rad21-4 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      29075016..29082417
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782607.3 → XP_015638093.1  sister chromatid cohesion 1 protein 1 isoform X3

      UniProtKB/TrEMBL
      B8AX57
      Conserved Domains (1) summary
      pfam04825
      Location:1 → 107
      Rad21_Rec8_N; N-terminus of Rad21 / Rec8 like protein

    2. XM_015782606.3 → XP_015638092.1  sister chromatid cohesion 1 protein 1 isoform X1

      UniProtKB/TrEMBL
      B8AX57, Q0DFN3, Q6UFU7
      Conserved Domains (2) summary
      pfam04824
      Location:554 → 608
      Rad21_Rec8; Conserved region of Rad21 / Rec8 like protein
      pfam04825
      Location:1 → 107
      Rad21_Rec8_N; N-terminus of Rad21 / Rec8 like protein

    3. XM_066310398.1 → XP_066166495.1  sister chromatid cohesion 1 protein 1 isoform X2

    4. XM_066310399.1 → XP_066166496.1  sister chromatid cohesion 1 protein 1 isoform X4

    Nucleotide Protein
    Heading Accession and Version

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