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    LOC4351445 heterogeneous nuclear ribonucleoprotein Q [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351445, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4351445
    Gene description
    heterogeneous nuclear ribonucleoprotein Q
    Locus tag
    OSNPB_120136200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 11.6), flowers (RPKM 10.4) and 6 other tissues See more
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    Genomic context

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    See LOC4351445 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (1780068..1784157)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (1755519..1759694)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 41 Neighboring gene uncharacterized LOC4351443 Neighboring gene probable sugar phosphate/phosphate translocator At4g32390 Neighboring gene uncharacterized LOC107279776 Neighboring gene scarecrow-like protein 30

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterogeneous nuclear ribonucleoprotein Q
    Names
    Os12g0136200
    putative RNA-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      1780068..1784157
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764244.3 → XP_015619730.1  heterogeneous nuclear ribonucleoprotein Q isoform X1

      UniProtKB/TrEMBL
      Q0IQ94
      Conserved Domains (2) summary
      smart00360
      Location:158 → 227
      RRM; RNA recognition motif
      cl17169
      Location:326 → 404
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_066306310.1 → XP_066162407.1  heterogeneous nuclear ribonucleoprotein Q isoform X2

      UniProtKB/TrEMBL
      Q0IQ94, Q2QY16

    3. XM_015764248.3 → XP_015619734.1  heterogeneous nuclear ribonucleoprotein Q isoform X2

      UniProtKB/TrEMBL
      Q0IQ94, Q2QY16
      Conserved Domains (1) summary
      TIGR01648
      Location:107 → 426
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    4. XM_015764247.3 → XP_015619733.1  heterogeneous nuclear ribonucleoprotein Q isoform X2

      UniProtKB/TrEMBL
      Q0IQ94, Q2QY16
      Conserved Domains (1) summary
      TIGR01648
      Location:107 → 426
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    Nucleotide Protein
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