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    LOC4326449 probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326449, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4326449
    Gene description
    probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase
    Locus tag
    OSNPB_010103600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0436E04.5
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 84.0), roots after flowering (RPKM 64.5) and 5 other tissues See more
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    Genomic context

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    See LOC4326449 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (190658..195314, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (186246..190899, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transfer RNA leucine (anticodon AAG) Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene uncharacterized LOC4326450 Neighboring gene uncharacterized protein At1g76660 Neighboring gene uncharacterized LOC4326452 Neighboring gene C-type lectin receptor-like tyrosine-protein kinase At1g52310

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables C-8 sterol isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cholestenol delta-isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables steroid delta-isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sterol biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase
    Names
    Cholestenol Delta-isomerase
    D8-D7 sterol isomerase
    Delta(8)-Delta(7) sterol isomerase
    LOC_Os01g01369
    P0436E04.8-1
    P0455C04.26
    putative C-8,7 sterol isomerase
    putative phenylalkylamine binding protein
    NP_001384925.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001397996.1 → NP_001384925.1  probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase

      Status: VALIDATED

      Source sequence(s)
      AK059848, AK102848, CF277872
      UniProtKB/Swiss-Prot
      A0A0N7KC64, Q0JRF7, Q7F734, Q9FTZ2
      UniProtKB/TrEMBL
      B8ACS4
      Conserved Domains (1) summary
      pfam05241
      Location:94 → 203
      EBP; Emopamil binding protein

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      190658..195314 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FTZ2.1 GenPept UniProtKB/Swiss-Prot:Q9FTZ2

    Gene LinkOut

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