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    LOC4344289 transcription repressor OFP1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344289, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344289
    Gene description
    transcription repressor OFP1
    Locus tag
    OSNPB_070679200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1205_F02.5; OJ1409_C08.24
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    Genomic context

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    See LOC4344289 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (28993079..28994379)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (28759466..28760943)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene probable potassium transporter 9 Neighboring gene uncharacterized LOC107278351 Neighboring gene alpha-galactosidase 3 Neighboring gene uncharacterized LOC4344291

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription repressor OFP1
    Names
    Os07g0679200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      28993079..28994379
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791287.3 → XP_015646773.1  transcription repressor OFP1

      UniProtKB/TrEMBL
      B8B655, Q0D3M1, Q7XIV5
      Conserved Domains (1) summary
      pfam04844
      Location:260 → 315
      Ovate; Transcriptional repressor, ovate
    Nucleotide Protein
    Heading Accession and Version

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