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    LOC4337784 probable ATP-dependent DNA helicase CHR719 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337784, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337784
    Gene description
    probable ATP-dependent DNA helicase CHR719
    Locus tag
    OSNPB_050144300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 21.4), leaves after flowering (RPKM 18.7) and 6 other tissues See more
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    Genomic context

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    See LOC4337784 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (2563018..2573728, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (2548436..2559324, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene LEC14B protein Neighboring gene ribosome biogenesis protein NOP53 Neighboring gene serine/threonine-protein phosphatase BSL1 homolog Neighboring gene transfer RNA asparagine (anticodon GUU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable ATP-dependent DNA helicase CHR719
    Names
    Os05g0144300
    probable ATP-dependent DNA helicase CHR12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      2563018..2573728 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784614.3 → XP_015640100.1  probable ATP-dependent DNA helicase CHR719

      UniProtKB/Swiss-Prot
      A0A0P0WHU3, Q60EX7
      UniProtKB/TrEMBL
      B9FH65
      Conserved Domains (2) summary
      PLN03142
      Location:301 → 945
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      pfam14619
      Location:954 → 1016
      SnAC; Snf2-ATP coupling, chromatin remodelling complex
    Nucleotide Protein
    Heading Accession and Version

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