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    LOC4330379 AP-2 complex subunit mu [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330379, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330379
    Gene description
    AP-2 complex subunit mu
    Locus tag
    OSNPB_020690700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1743_B12.40
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    Genomic context

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    See LOC4330379 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (28844352..28849236)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (28355603..28360590)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable protein phosphatase 2C 26 Neighboring gene E3 ubiquitin-protein ligase PUB23 Neighboring gene acetylornithine deacetylase Neighboring gene transcription factor bHLH96

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of clathrin adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-2 complex subunit mu
    Names
    Os02g0690700
    putative Clathrin coat assembly protein AP50

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      28844352..28849236
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772142.3 → XP_015627628.1  AP-2 complex subunit mu

      UniProtKB/TrEMBL
      A0A0P0VNI0, A3AAA5, B8AGS7, Q6ZGX8
      Conserved Domains (2) summary
      cd09251
      Location:175 → 437
      AP-2_Mu2_Cterm; C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2
      cd14836
      Location:6 → 144
      AP2_Mu_N; AP-2 complex subunit mu N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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