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    LOC4324676 uncharacterized LOC4324676 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324676, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4324676
    Gene description
    uncharacterized LOC4324676
    Locus tag
    OSNPB_010558800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 33.1), leaves after flowering (RPKM 13.5) and 5 other tissues See more
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    Genomic context

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    See LOC4324676 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (21151536..21155639, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At1g51745 Neighboring gene ras-related protein RIC1-like Neighboring gene uncharacterized LOC9267897 Neighboring gene zinc protease PQQL-like Neighboring gene PITH domain-containing protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4324676
    Names
    B1064G04.11
    B1144D11.33
    Os01g0558800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      21151536..21155639 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766770.2 → XP_015622256.1  uncharacterized protein LOC4324676

      UniProtKB/TrEMBL
      B8AAC5, B9EXJ4, Q5JKR3, Q5JLJ8
      Conserved Domains (1) summary
      pfam12049
      Location:130 → 269
      DUF3531; Protein of unknown function (DUF3531)
    Nucleotide Protein
    Heading Accession and Version

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