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    LOC4348669 BTB/POZ and MATH domain-containing protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348669, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4348669
    Gene description
    BTB/POZ and MATH domain-containing protein 2
    Locus tag
    OSNPB_100425400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4348669 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (15765116..15766900)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (15101736..15103827)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene proline-rich receptor-like protein kinase PERK2 Neighboring gene uncharacterized LOC136353546 Neighboring gene BTB/POZ and MATH domain-containing protein 2-like Neighboring gene BTB/POZ and MATH domain-containing protein 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ and MATH domain-containing protein 2
    Names
    Bric-a-Brac, Tramtrack, Broad Complex BTB domain BTB6
    Os10g0425400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      15765116..15766900
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757981.3 → XP_015613467.1  BTB/POZ and MATH domain-containing protein 2

      UniProtKB/TrEMBL
      A3C4X3, Q0IXL1, Q7XEE8
      Conserved Domains (4) summary
      smart00225
      Location:207 → 320
      BTB; Broad-Complex, Tramtrack and Bric a brac
      cd00121
      Location:27 → 163
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      cd14736
      Location:320 → 380
      SPOP_C_like_plant; BACK-like Domain C-terminal to BTB in plant proteins similar to speckle-type POZ protein (SPOP)
      pfam00651
      Location:196 → 317
      BTB; BTB/POZ domain
    Nucleotide Protein
    Heading Accession and Version

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