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    LOC4327386 ubiquitin-conjugating enzyme E2 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327386, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4327386
    Gene description
    ubiquitin-conjugating enzyme E2 7
    Locus tag
    OSNPB_010839700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0408C03.9
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    Genomic context

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    See LOC4327386 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (36642293..36648469, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (36017253..36023464, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene histone H2B.11-like Neighboring gene uncharacterized LOC136356263 Neighboring gene transfer RNA arginine (anticodon CCG) Neighboring gene osmotin-like protein Neighboring gene heat shock 70 kDa protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin-conjugating enzyme E2 7
    Names
    Os01g0839700
    P0031D11.34
    putative ubiquitin carrier protein UBC7
    ubiquitin carrier protein
    NP_001396014.1
    XP_066163080.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409085.1 → NP_001396014.1  ubiquitin-conjugating enzyme E2 7

      Status: VALIDATED

      Source sequence(s)
      AK104148
      UniProtKB/TrEMBL
      A0A0P0VA56, A0A8J8XQ44, A2WWU3, Q0JHV9, Q943L1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      36642293..36648469 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306983.1 → XP_066163080.1  ubiquitin-conjugating enzyme E2 7 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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