LOC4335634 probable sodium/metabolite cotransporter BASS1, chloroplastic [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4335634
Gene description: probable sodium/metabolite cotransporter BASS1, chloroplastic
Locus tag: OSNPB_040381100
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: BASS1
Expression: Ubiquitous expression in flower buds (RPKM 13.2), flowers (RPKM 13.1) and 6 other tissues See more
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 4

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	4	NC_089038.1 (19030360..19035508)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	4	NC_029259.1 (18675935..18681078)

Chromosome 4 - NC_089038.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: probable sodium/metabolite cotransporter BASS1, chloroplastic

Names: Bile acid-sodium symporter family protein 1; LOC_Os04g31210; OSJNBa0072D21.3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001419252.1 → NP_001406181.1 probable sodium/metabolite cotransporter BASS1, chloroplastic

Status: VALIDATED

Source sequence(s)

AK060452, AK121764, CI226062

UniProtKB/Swiss-Prot

A0A0P0W9L6, B7E506, Q7XVB3

UniProtKB/TrEMBL

Q01LJ7

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089038.1 Reference ASM3414082v1 Primary Assembly

Range

19030360..19035508

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015778207.3 → XP_015633693.1 probable sodium/metabolite cotransporter BASS1, chloroplastic isoform X1

UniProtKB/Swiss-Prot

A0A0P0W9L6, B7E506, Q7XVB3

UniProtKB/TrEMBL

Q01LJ7

Conserved Domains (1) summary

COG0385
Location:101 → 397

YfeH; Predicted Na+-dependent transporter [General function prediction only]