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    LOC4336004 7-deoxyloganetin glucosyltransferase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336004, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336004
    Gene description
    7-deoxyloganetin glucosyltransferase
    Locus tag
    OSNPB_040451200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 10.4), roots before flowering (RPKM 7.2) and 5 other tissues See more
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    Genomic context

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    See LOC4336004 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22972919..22975984)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22481391..22483235)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene histone H3.3 Neighboring gene WEB family protein At3g02930, chloroplastic Neighboring gene uncharacterized LOC4336003 Neighboring gene uncharacterized LOC136356221 Neighboring gene uncharacterized LOC136356222

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UDP-glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    7-deoxyloganetin glucosyltransferase
    Names
    Os04g0451200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      22972919..22975984
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780390.3 → XP_015635876.1  7-deoxyloganetin glucosyltransferase

      UniProtKB/TrEMBL
      A0A0N7KJ54, A2XU29, Q0JCS7, Q7XV42
      Conserved Domains (1) summary
      cl10013
      Location:14 → 480
      Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    Nucleotide Protein
    Heading Accession and Version

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