LOC4324458 thioredoxin Y, chloroplastic-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4324458
Gene description: thioredoxin Y, chloroplastic-like
Locus tag: OSNPB_010963400
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: OsTrxy
Expression: Ubiquitous expression in leaves before flowering (RPKM 56.3), leaves after flowering (RPKM 38.6) and 6 other tissues See more
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Genomic context

Location:: chromosome: 1

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	1	NC_089035.1 (43103272..43106909)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	1	NC_029256.1 (42451096..42454743)

Chromosome 1 - NC_089035.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEA Inferred from Electronic Annotation more info	PubMed
enables protein-disulfide reductase activity	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: thioredoxin Y, chloroplastic

Names: LOC_Os01g73234; P0483G10.36; thioredoxin M-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001428111.1 → NP_001415040.1 thioredoxin Y, chloroplastic

Status: VALIDATED

Source sequence(s)

AK062343, CB685939, CI298999

UniProtKB/Swiss-Prot

Q0JFS8, Q5JMR9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089035.1 Reference ASM3414082v1 Primary Assembly

Range

43103272..43106909

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_026022495.2 → XP_025878280.1 thioredoxin Y, chloroplastic isoform X1

UniProtKB/Swiss-Prot

Q0JFS8, Q5JMR9

Conserved Domains (1) summary

TIGR01068
Location:65 → 164

thioredoxin
XM_015766793.3 → XP_015622279.1 thioredoxin Y, chloroplastic isoform X1

UniProtKB/Swiss-Prot

Q0JFS8, Q5JMR9

Conserved Domains (1) summary

TIGR01068
Location:65 → 164

thioredoxin