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    LOC4327887 cytokinin dehydrogenase 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327887, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4327887
    Gene description
    cytokinin dehydrogenase 5-like
    Locus tag
    OSNPB_010775400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CKX5; OsCKX5; P0413G02.1
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    Genomic context

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    See LOC4327887 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (33394262..33398443, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32788483..32792761, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene myosin-binding protein 1 Neighboring gene TNF receptor-associated factor homolog 1b Neighboring gene jacalin-related lectin 3 Neighboring gene uncharacterized LOC4327889

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cytokinin dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytokinin metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytokinin dehydrogenase 5
    Names
    Cytokinin oxidase 5
    LOC_Os01g56810
    P0490D09.33
    putative cytokinin oxidase
    NP_001388663.1
    XP_015625931.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401734.1 → NP_001388663.1  cytokinin dehydrogenase 5 precursor

      Status: VALIDATED

      Source sequence(s)
      AK101022, AP014957, CI221223
      UniProtKB/Swiss-Prot
      A0A0P0V8U9, Q5ZAY9
      UniProtKB/TrEMBL
      A2WVL5, A2ZYC8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      33394262..33398443 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770445.3 → XP_015625931.1  cytokinin dehydrogenase 5 isoform X1

      Conserved Domains (3) summary
      PLN02441
      Location:1 → 424
      PLN02441; cytokinin dehydrogenase
      pfam01565
      Location:63 → 212
      FAD_binding_4; FAD binding domain
      pfam09265
      Location:244 → 424
      Cytokin-bind; Cytokinin dehydrogenase 1, FAD and cytokinin binding
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZAY9.1 GenPept UniProtKB/Swiss-Prot:Q5ZAY9

    Gene LinkOut

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    Research Materials