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    LOC4336633 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336633, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336633
    Gene description
    5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic
    Locus tag
    OSNPB_040557000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 32.4), flowers (RPKM 13.1) and 4 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (28373276..28375565)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (27868029..27870371)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene uncharacterized LOC4336632 Neighboring gene anthocyanin regulatory R-S protein Neighboring gene anthocyanin regulatory R-S protein-like Neighboring gene uncharacterized LOC136356309

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic
    Names
    Os04g0557000
    phosphorylated carbohydrates phosphatase TM_1254

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      28373276..28375565
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778677.3 → XP_015634163.1  5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic

      UniProtKB/TrEMBL
      A0A0N7KJH6, Q01IN6, Q7XTZ9
      Conserved Domains (1) summary
      PLN02575
      Location:16 → 345
      PLN02575; haloacid dehalogenase-like hydrolase

    2. XM_015778678.3 → XP_015634164.1  5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic

      UniProtKB/TrEMBL
      A0A0N7KJH6, Q01IN6, Q7XTZ9
      Conserved Domains (1) summary
      PLN02575
      Location:16 → 345
      PLN02575; haloacid dehalogenase-like hydrolase

    RNA

    1. XR_001545067.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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