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    LOC4338430 cyclin-P4-1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338430, updated on 21-Dec-2023

    Summary

    Gene symbol
    LOC4338430
    Gene description
    cyclin-P4-1-like
    Locus tag
    OSNPB_050327000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 1.5), flower buds (RPKM 1.1) and 6 other tissues See more
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    Genomic context

    See LOC4338430 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (15163882..15166478, complement)

    Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280891 Neighboring gene uncharacterized LOC9267833 Neighboring gene uncharacterized LOC9268078 Neighboring gene uncharacterized LOC9270722 Neighboring gene uncharacterized LOC107281063

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    cyclin-P4-1-like; uncharacterized protein LOC4338430
    Names
    Os05g0327000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

      Range
      15163882..15166478 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026025302.1XP_025881087.1  cyclin-P4-1-like isoform X1

      UniProtKB/TrEMBL
      A0A5S6RCL2, B9FGQ1, Q0DJ51, Q5W688
      Conserved Domains (1) summary
      cl00050
      Location:55180
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
    2. XM_015784038.2XP_015639524.1  uncharacterized protein LOC4338430 isoform X2

      UniProtKB/TrEMBL
      B7ERZ0
    3. XM_015784037.2XP_015639523.1  cyclin-P4-1-like isoform X1

      UniProtKB/TrEMBL
      A0A5S6RCL2, B9FGQ1, Q0DJ51, Q5W688
      Conserved Domains (1) summary
      cl00050
      Location:55180
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
    4. XM_015784036.2XP_015639522.1  cyclin-P4-1-like isoform X1

      UniProtKB/TrEMBL
      A0A5S6RCL2, B9FGQ1, Q0DJ51, Q5W688
      Conserved Domains (1) summary
      cl00050
      Location:55180
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...