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    LOC4344593 pentatricopeptide repeat-containing protein At1g53600, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344593, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4344593
    Gene description
    pentatricopeptide repeat-containing protein At1g53600, mitochondrial
    Locus tag
    OSNPB_080131000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 1.5), flowers (RPKM 1.4) and 6 other tissues See more
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    Genomic context

    See LOC4344593 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (1761531..1764149)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (1749844..1751934)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ domain-containing protein At1g30440 Neighboring gene hydroxyproline O-galactosyltransferase GALT2 Neighboring gene cytochrome P450 703A2-like Neighboring gene non-specific lipid-transfer protein A

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    pentatricopeptide repeat-containing protein At1g53600, mitochondrial
    Names
    OSJNBb0009H02.8
    Os08g0131000
    P0582D05.138
    putative pentatricopeptide (PPR) repeat-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422895.1NP_001409824.1  pentatricopeptide repeat-containing protein At1g53600, mitochondrial

      Status: VALIDATED

      Source sequence(s)
      AK067165, AK100132, AK101091
      UniProtKB/TrEMBL
      Q0J875, Q7EZR5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      1761531..1764149
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)