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    LOC4332464 two-component response regulator-like PRR73 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332464, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4332464
    Gene description
    two-component response regulator-like PRR73
    Locus tag
    OSNPB_030284100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PRR73; OsPRR73
    Expression
    Ubiquitous expression in roots after flowering (RPKM 173.2), leaves before flowering (RPKM 123.4) and 6 other tissues See more
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    Genomic context

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    See LOC4332464 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (9810234..9819357, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (9759583..9768679, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase PBL27 Neighboring gene elongator complex protein 6 Neighboring gene large ribosomal subunit protein uL10c Neighboring gene mitochondrial hydrolase YKR070W

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The transcriptional repressor OsPRR73 links circadian clock and photoperiod pathway to control heading date in rice. Liang L, et al. Plant Cell Environ, 2021 Mar. PMID 33377200
    2. Clock component OsPRR73 positively regulates rice salt tolerance by modulating OsHKT2;1-mediated sodium homeostasis. Wei H, et al. EMBO J, 2021 Feb 1. PMID 33347628, Free PMC Article
    3. Circadian-associated rice pseudo response regulators (OsPRRs): insight into the control of flowering time. Murakami M, et al. Biosci Biotechnol Biochem, 2005 Feb. PMID 15725670
    4. The evolutionarily conserved OsPRR quintet: rice pseudo-response regulators implicated in circadian rhythm. Murakami M, et al. Plant Cell Physiol, 2003 Nov. PMID 14634161
    5. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Clock component OsPRR73 positively regulates rice salt tolerance by modulating OsHKT2;1-mediated sodium homeostasis.
      Title: Clock component OsPRR73 positively regulates rice salt tolerance by modulating OsHKT2;1-mediated sodium homeostasis.
    2. The transcriptional repressor OsPRR73 links circadian clock and photoperiod pathway to control heading date in rice.
      Title: The transcriptional repressor OsPRR73 links circadian clock and photoperiod pathway to control heading date in rice.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytokinin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphorelay signal transduction system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    two-component response regulator-like PRR73
    Names
    LOC_Os03g17570
    pseudo-response regulator 73

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402130.1 → NP_001389059.1  two-component response regulator-like PRR73 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK068603, AK121136, AU093923, CB646363
      UniProtKB/Swiss-Prot
      A2XFB7, Q10N34, Q689G4, Q689G7, Q8H8T5
      UniProtKB/TrEMBL
      B9F7P0

    2. NM_001402131.1 → NP_001389060.1  two-component response regulator-like PRR73 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK121136, AU093923, CB646363, CI569021
      UniProtKB/Swiss-Prot
      A2XFB7, Q689G4, Q689G7, Q8H8T5
      UniProtKB/TrEMBL
      Q10N33

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      9810234..9819357 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066308135.1 → XP_066164232.1  two-component response regulator-like PRR73 isoform X1

    2. XM_015775212.3 → XP_015630698.1  two-component response regulator-like PRR73 isoform X1

      UniProtKB/Swiss-Prot
      A2XFB7, Q10N34, Q689G4, Q689G7, Q8H8T5
      UniProtKB/TrEMBL
      B9F7P0
      Conserved Domains (2) summary
      cd17582
      Location:83 → 186
      psREC_PRR; pseudo receiver domain of pseudo-response regulators
      pfam06203
      Location:712 → 755
      CCT; CCT motif

    3. XM_066308133.1 → XP_066164230.1  two-component response regulator-like PRR73 isoform X1

    4. XM_066308136.1 → XP_066164233.1  two-component response regulator-like PRR73 isoform X2

    5. XM_066308134.1 → XP_066164231.1  two-component response regulator-like PRR73 isoform X1

    6. XM_015775211.3 → XP_015630697.1  two-component response regulator-like PRR73 isoform X1

      UniProtKB/Swiss-Prot
      A2XFB7, Q10N34, Q689G4, Q689G7, Q8H8T5
      UniProtKB/TrEMBL
      B9F7P0
      Conserved Domains (2) summary
      cd17582
      Location:83 → 186
      psREC_PRR; pseudo receiver domain of pseudo-response regulators
      pfam06203
      Location:712 → 755
      CCT; CCT motif

    7. XM_066308137.1 → XP_066164234.1  two-component response regulator-like PRR73 isoform X2

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10N34.1 GenPept UniProtKB/Swiss-Prot:Q10N34

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