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    LOC4325758 BTB/POZ domain and ankyrin repeat-containing protein NPR5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325758, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4325758
    Gene description
    BTB/POZ domain and ankyrin repeat-containing protein NPR5-like
    Locus tag
    OSNPB_010948900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    NH4; NPR4; NPR5; OsNPR5
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    Genomic context

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    See LOC4325758 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (42392825..42396387, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (41741160..41744721, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 43 Neighboring gene protein CYSTEINE-RICH TRANSMEMBRANE MODULE 12 Neighboring gene protein OSB2, chloroplastic Neighboring gene uncharacterized LOC107281494

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in induced systemic resistance, jasmonic acid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plant organ development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bTB/POZ domain and ankyrin repeat-containing protein NPR5
    Names
    BTB/POZ domain and ankyrin repeat-containing protein NPR5
    Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Ankyrin repeat region BTBA3
    LOC_Os01g72020
    P0466H10.44-1
    ankyrin-repeat protein
    non-inducible immunity 1-like
    putative NPR1-like protein 4
    regulatory protein NPR5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401489.1 → NP_001388418.1  bTB/POZ domain and ankyrin repeat-containing protein NPR5

      Status: VALIDATED

      Source sequence(s)
      AP014957, CI221863, DQ450955
      UniProtKB/Swiss-Prot
      A2CIR7, Q0JG18, Q5JMU1
      UniProtKB/TrEMBL
      A2WZ25

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      42392825..42396387 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066303584.1 → XP_066159681.1  bTB/POZ domain and ankyrin repeat-containing protein NPR5 isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A2CIR7.1 GenPept UniProtKB/Swiss-Prot:A2CIR7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials