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    LOC4324928 sister chromatid cohesion protein PDS5 homolog A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324928, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4324928
    Gene description
    sister chromatid cohesion protein PDS5 homolog A
    Locus tag
    OSNPB_010869300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 2.8), flowers (RPKM 2.3) and 2 other tissues See more
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    Genomic context

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    See LOC4324928 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37667335..37681855, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene cadmium/zinc-transporting ATPase HMA3-like Neighboring gene magnesium transporter MRS2-E-like Neighboring gene UDP-glycosyltransferase 1 Neighboring gene AUGMIN subunit 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic sister chromatid cohesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sister chromatid cohesion protein PDS5 homolog A
    Names
    Os01g0869300
    P0677H08.31
    P0677H08.32

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      37667335..37681855 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766840.2 → XP_015622326.1  sister chromatid cohesion protein PDS5 homolog A

      UniProtKB/TrEMBL
      B9EUV6
      Conserved Domains (2) summary
      cd20404
      Location:1240 → 1290
      Tudor_Agenet_AtEML-like; Tudor-like Agenet domain found in Arabidopsis thaliana proteins EMSY-LIKE 1-4 (AtEML1-4) and similar proteins
      cd19953
      Location:26 → 639
      PDS5; Sister chromatid cohesion protein PDS5
    Nucleotide Protein
    Heading Accession and Version

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