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    LOC4324413 DEAD-box ATP-dependent RNA helicase 18-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324413, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4324413
    Gene description
    DEAD-box ATP-dependent RNA helicase 18-like
    Locus tag
    OSNPB_010164500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    bip115; OsJ_00495; P0701D05.2
    Expression
    Ubiquitous expression in flower buds (RPKM 13.0), flowers (RPKM 9.5) and 6 other tissues See more
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    Genomic context

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    See LOC4324413 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (3337207..3340628, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (3328513..3332015, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene non-classical arabinogalactan protein 31 Neighboring gene transcription initiation factor TFIID subunit 15b Neighboring gene probable protein phosphatase 2C 1 Neighboring gene protein GET4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dEAD-box ATP-dependent RNA helicase 18
    Names
    B1189A09.47
    BRI1-KD-interacting protein 115
    DEAD-box ATP-dependent RNA helicase 18
    LOC_Os01g07080
    putative RNA helicase
    NP_001393042.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406113.1 → NP_001393042.1  dEAD-box ATP-dependent RNA helicase 18

      Status: VALIDATED

      Source sequence(s)
      AK068747, CI089401
      UniProtKB/Swiss-Prot
      B7EFB7, Q761Z9, Q942Q0
      UniProtKB/TrEMBL
      B8ADF1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      3337207..3340628 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q761Z9.2 GenPept UniProtKB/Swiss-Prot:Q761Z9

    Gene LinkOut

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