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    LOC4325131 callose synthase 12 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325131, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4325131
    Gene description
    callose synthase 12
    Locus tag
    OSNPB_010754200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 14.3), leaves before flowering (RPKM 12.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (32241561..32250931, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (31641432..31650879, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial Neighboring gene uncharacterized protein At4g28440 Neighboring gene small nucleolar RNA J33 Neighboring gene altered inheritance of mitochondria protein 3 Neighboring gene pentatricopeptide repeat-containing protein At3g58590

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1,3-beta-D-glucan synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in (1->3)-beta-D-glucan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 1,3-beta-D-glucan synthase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    callose synthase 12
    Names
    Os01g0754200
    P0503C12.17-2
    putative callose synthase 1 catalytic subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      32241561..32250931 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304088.1 → XP_066160185.1  callose synthase 12

      UniProtKB/TrEMBL
      A0A0P0V887, A0A9K3Y7P4, Q0JJ86, Q5JMM8, Q8S1X0

    2. XM_015761139.3 → XP_015616625.1  callose synthase 12

      UniProtKB/TrEMBL
      A0A0P0V887, A0A9K3Y7P4, Q0JJ86, Q5JMM8, Q8S1X0
      Conserved Domains (2) summary
      pfam02364
      Location:887 → 1657
      Glucan_synthase; 1,3-beta-glucan synthase component
      pfam14288
      Location:175 → 286
      FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

    3. XM_015761151.3 → XP_015616637.1  callose synthase 12

      UniProtKB/TrEMBL
      A0A0P0V887, A0A9K3Y7P4, Q0JJ86, Q5JMM8, Q8S1X0
      Conserved Domains (2) summary
      pfam02364
      Location:887 → 1657
      Glucan_synthase; 1,3-beta-glucan synthase component
      pfam14288
      Location:175 → 286
      FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

    4. XM_015761145.3 → XP_015616631.1  callose synthase 12

      UniProtKB/TrEMBL
      A0A0P0V887, A0A9K3Y7P4, Q0JJ86, Q5JMM8, Q8S1X0
      Conserved Domains (2) summary
      pfam02364
      Location:887 → 1657
      Glucan_synthase; 1,3-beta-glucan synthase component
      pfam14288
      Location:175 → 286
      FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
    Nucleotide Protein
    Heading Accession and Version

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