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    LOC4330746 photosynthetic NDH subunit of lumenal location 4, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330746, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330746
    Gene description
    photosynthetic NDH subunit of lumenal location 4, chloroplastic
    Locus tag
    OSNPB_020751600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4330746 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (32086534..32088427)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31591218..31593124)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene FCS-Like Zinc finger 3 Neighboring gene uncharacterized LOC136355365 Neighboring gene 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1 Neighboring gene type I inositol polyphosphate 5-phosphatase 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    photosynthetic NDH subunit of lumenal location 4, chloroplastic
    Names
    Os02g0751600
    P0431B06.35
    putative FKBP-type peptidyl-prolyl cis-trans isomerase 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      32086534..32088427
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768425.3 → XP_015623911.1  photosynthetic NDH subunit of lumenal location 4, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0VPV9, B8AIS0, B9F308, Q6Z8J5
      Conserved Domains (1) summary
      COG0545
      Location:103 → 228
      FkpA; FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

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