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    LOC4341179 protein ENHANCED DISEASE RESISTANCE 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341179, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341179
    Gene description
    protein ENHANCED DISEASE RESISTANCE 4
    Locus tag
    OSNPB_060524300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1616_B03.21
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    Genomic context

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    See LOC4341179 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (20256379..20262126)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (19400733..19406888)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356871 Neighboring gene uncharacterized LOC136357020 Neighboring gene protein trichome birefringence-like 24 Neighboring gene uncharacterized LOC4341181 Neighboring gene UPF0481 protein At3g47200

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of defense response to fungus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ENHANCED DISEASE RESISTANCE 4
    Names
    OSJNBa0009J19.50
    Os06g0524300
    extra-large G-protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      20256379..20262126
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789035.3 → XP_015644521.1  protein ENHANCED DISEASE RESISTANCE 4

      UniProtKB/TrEMBL
      B8B352, Q0DBV2, Q654D6
      Conserved Domains (1) summary
      pfam11331
      Location:425 → 463
      zinc_ribbon_12; Probable zinc-ribbon domain
    Nucleotide Protein
    Heading Accession and Version

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