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    LOC4325695 17.9 kDa heat shock protein 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325695, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4325695
    Gene description
    17.9 kDa heat shock protein 2-like
    Locus tag
    OSNPB_010135900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HSP17.9B; OsHsp17.9B; P0443D08.1
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    Genomic context

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    See LOC4325695 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (1948662..1949577)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (1940990..1941882)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable calcium-binding protein CML16 Neighboring gene 16.6 kDa heat shock protein-like Neighboring gene 16.9 kDa class I heat shock protein 3-like Neighboring gene 16.9 kDa class I heat shock protein 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein complex oligomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to heat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to hydrogen peroxide IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to salt stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    17.9 kDa heat shock protein 2
    Names
    16.9 kDa heat shock protein
    LOC_Os01g04350
    putative LMW heat shock protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401475.1 → NP_001388404.1  17.9 kDa heat shock protein 2

      Status: VALIDATED

      Source sequence(s)
      CI299671, GU120337
      UniProtKB/Swiss-Prot
      Q0JQW2, Q943E9
      UniProtKB/TrEMBL
      E5D3J6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      1948662..1949577
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q943E9.1 GenPept UniProtKB/Swiss-Prot:Q943E9

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