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    LOC4351254 protein trichome birefringence-like 28 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351254, updated on 21-Dec-2023

    Summary

    Gene symbol
    LOC4351254
    Gene description
    protein trichome birefringence-like 28
    Locus tag
    OSNPB_120104700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    XOAT3
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 23.9), roots after flowering (RPKM 21.2) and 6 other tissues See more
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    Genomic context

    See LOC4351254 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (242909..247377)

    Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene protein DWARF 53-LIKE-like Neighboring gene fatty acid desaturase DES3 Neighboring gene clathrin heavy chain 2-like Neighboring gene probable calcium-binding protein CML25/26 Neighboring gene uncharacterized LOC107275796

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    protein trichome birefringence-like 28
    Names
    Os12g0104700
    xylan O-acetyltransferase 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

      Range
      242909..247377
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765136.2XP_015620622.1  protein trichome birefringence-like 28

      UniProtKB/Swiss-Prot
      B9GBE1, Q0IQR9, Q2QYW3
      UniProtKB/TrEMBL
      A2ZH76
      Conserved Domains (2) summary
      pfam13839
      Location:149438
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:95148
      PMR5N; PMR5 N terminal Domain