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    LOC4325759 protein OSB2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325759, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4325759
    Gene description
    protein OSB2, chloroplastic
    Locus tag
    OSNPB_010949060
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4325759 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (42433403..42440511, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (41777286..41788563, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein CYSTEINE-RICH TRANSMEMBRANE MODULE 12 Neighboring gene BTB/POZ domain and ankyrin repeat-containing protein NPR5-like Neighboring gene uncharacterized LOC107281494 Neighboring gene probable calcium-binding protein CML23

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial nucleoid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein OSB2, chloroplastic
    Names
    B1147A04.4-1
    B1147A04.4-2
    Os01g0949060
    protein OSB3, chloroplastic/mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      42433403..42440511 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306791.1 → XP_066162888.1  protein OSB2, chloroplastic isoform X2

      UniProtKB/TrEMBL
      B8A958, B9EWG1

    2. XM_015766904.3 → XP_015622390.1  protein OSB2, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A0P0VCT0, A0A979HJ81, B8A958, B9EWG1, Q5JKX9
      Conserved Domains (1) summary
      cl09930
      Location:85 → 153
      RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.

    3. XM_015766905.3 → XP_015622391.1  protein OSB2, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A0P0VCT0, A0A979HJ81, B8A958, B9EWG1, Q5JKX9
      Conserved Domains (1) summary
      cl09930
      Location:85 → 153
      RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.
    Nucleotide Protein
    Heading Accession and Version

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