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    LOC4345836 transcription factor AIG1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345836, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345836
    Gene description
    transcription factor AIG1
    Locus tag
    OSNPB_080477900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1666_A04.16
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (23712289..23713864)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (23572569..23574230)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene protein transport protein SEC31 Neighboring gene uncharacterized LOC4345835 Neighboring gene vegetative cell wall protein gp1 Neighboring gene uncharacterized LOC4345838

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor AIG1
    Names
    Os08g0477900
    bHLH protein family-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      23712289..23713864
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794062.3 → XP_015649548.1  transcription factor AIG1

      UniProtKB/TrEMBL
      A0A0P0XGU4, A3BU46, Q6ZJC8
      Conserved Domains (2) summary
      cl00081
      Location:19 → 83
      bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily
      cl09141
      Location:124 → 192
      ACT; ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme
    Nucleotide Protein
    Heading Accession and Version

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