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    LOC4332646 protein REDUCED WALL ACETYLATION 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332646, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332646
    Gene description
    protein REDUCED WALL ACETYLATION 1
    Locus tag
    OSNPB_030314200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 48.6), roots before flowering (RPKM 38.0) and 6 other tissues See more
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    Genomic context

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    See LOC4332646 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (11295759..11300982, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (11242229..11247486, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 Neighboring gene pentatricopeptide repeat-containing protein At1g05750, chloroplastic Neighboring gene uncharacterized LOC4332648

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in plant-type secondary cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in xylan acetylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in xylan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in xyloglucan metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein REDUCED WALL ACETYLATION 1
    Names
    Os03g0314200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      11295759..11300982 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775533.2 → XP_015631019.1  protein REDUCED WALL ACETYLATION 1 isoform X4

      UniProtKB/TrEMBL
      B9F843, Q0DSE2, Q10MC5
      Conserved Domains (1) summary
      pfam07779
      Location:125 → 529
      Cas1_AcylT; 10 TM Acyl Transferase domain found in Cas1p

    2. XM_066308928.1 → XP_066165025.1  protein REDUCED WALL ACETYLATION 1 isoform X2

    3. XM_066308929.1 → XP_066165026.1  protein REDUCED WALL ACETYLATION 1 isoform X3

    4. XM_026023684.2 → XP_025879469.1  protein REDUCED WALL ACETYLATION 1 isoform X1

      UniProtKB/TrEMBL
      B9F843
      Conserved Domains (1) summary
      pfam07779
      Location:114 → 534
      Cas1_AcylT; 10 TM Acyl Transferase domain found in Cas1p
    Nucleotide Protein
    Heading Accession and Version

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