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    LOC4343164 acetylornithine aminotransferase, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343164, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343164
    Gene description
    acetylornithine aminotransferase, mitochondrial
    Locus tag
    OSNPB_070461900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 25.8), roots before flowering (RPKM 24.3) and 6 other tissues See more
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    Genomic context

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    See LOC4343164 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (16373698..16375836, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (16208790..16211219, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene clathrin light chain 3 Neighboring gene uncharacterized LOC4343162 Neighboring gene glutamate--cysteine ligase B, chloroplastic-like Neighboring gene uncharacterized LOC107281543

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables identical protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in arginine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    acetylornithine aminotransferase, mitochondrial
    Names
    Os07g0461900
    P0038F09.37
    putative acetylornithine aminotransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      16373698..16375836 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792513.3 → XP_015647999.1  acetylornithine aminotransferase, mitochondrial

      Conserved Domains (2) summary
      PLN00144
      Location:89 → 438
      PLN00144; acetylornithine transaminase
      TIGR00707
      Location:77 → 438
      argD; transaminase, acetylornithine/succinylornithine family
    Nucleotide Protein
    Heading Accession and Version

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