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    LOC4324620 double-stranded RNA-binding protein 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324620, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4324620
    Gene description
    double-stranded RNA-binding protein 1-like
    Locus tag
    OSNPB_010772000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    DRB1
    Expression
    Ubiquitous expression in flower buds (RPKM 14.9), flowers (RPKM 14.8) and 6 other tissues See more
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    Genomic context

    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (33192504..33197661, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32586918..32592041, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene ubiquitin C-terminal hydrolase 13 Neighboring gene uncharacterized LOC4324619 Neighboring gene LOB domain-containing protein 20 Neighboring gene transcription initiation factor IIF subunit beta

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    double-stranded RNA-binding protein 1
    Names
    LOC_Os01g56520
    P0695H10.10
    dsRNA-binding protein 1
    putative dsRNA-binding protein ODB1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428143.1NP_001415072.1  double-stranded RNA-binding protein 1

      Status: VALIDATED

      Source sequence(s)
      AK069455, CF326453, CI250348, CI621491
      UniProtKB/Swiss-Prot
      A0A0P0V8T1, Q5N8Z0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      33192504..33197661 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783729.3XP_015639215.1  double-stranded RNA-binding protein 1 isoform X3

      Conserved Domains (2) summary
      cd00048
      Location:87153
      DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
      pfam00035
      Location:266
      dsrm; Double-stranded RNA binding motif
    2. XM_015783654.3XP_015639140.1  double-stranded RNA-binding protein 1 isoform X2

      Conserved Domains (2) summary
      cd00048
      Location:87153
      DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
      pfam00035
      Location:266
      dsrm; Double-stranded RNA binding motif
    3. XM_015783591.3XP_015639077.1  double-stranded RNA-binding protein 1 isoform X1

      Conserved Domains (3) summary
      cd19907
      Location:87153
      DSRM_AtDRB-like_rpt1; first double-stranded RNA binding motif of Arabidopsis thaliana double-stranded RNA-binding proteins (AtDRBs)and similar proteins
      pfam00035
      Location:266
      dsrm; Double-stranded RNA binding motif
      cl00054
      Location:170232
      DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily