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    LOC4342932 probable aldehyde oxidase 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342932, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4342932
    Gene description
    probable aldehyde oxidase 4
    Locus tag
    OSNPB_070282300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    AO-4
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    Genomic context

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    See LOC4342932 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (10839705..10858244)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (10748611..10767129)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281749 Neighboring gene putative aldehyde oxidase-like protein Neighboring gene L-type lectin-domain containing receptor kinase SIT2-like Neighboring gene uncharacterized LOC4342934

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 2 iron, 2 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable aldehyde oxidase 4
    Names
    LOC_Os07g18154
    OSJNBa0018O23.2
    Os07g0282401
    P0557D09.36
    P0557D09.38
    aldehyde oxidase-like
    putative aldehyde oxidase
    NP_001409034.1
    NP_001409035.1
    XP_015644601.1
    XP_025882781.1
    XP_066168063.1
    XP_066168064.1
    XP_066168065.1
    XP_066168066.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422105.1 → NP_001409034.1  probable aldehyde oxidase 4 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK072847, AP014963
      UniProtKB/Swiss-Prot
      Q69R21
      UniProtKB/TrEMBL
      A0A0P0X531, Q0D780

    2. NM_001422106.1 → NP_001409035.1  probable aldehyde oxidase 4 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK058321, AK072847, AP014963
      UniProtKB/TrEMBL
      B9FWN2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      10839705..10858244
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311968.1 → XP_066168065.1  probable aldehyde oxidase 4 isoform X5

      UniProtKB/TrEMBL
      B9FWN2

    2. XM_066311967.1 → XP_066168064.1  probable aldehyde oxidase 4 isoform X2

      UniProtKB/TrEMBL
      B9FWN2

    3. XM_026026996.2 → XP_025882781.1  probable aldehyde oxidase 4 isoform X3

      UniProtKB/TrEMBL
      B9FWN2
      Conserved Domains (1) summary
      PLN00192
      Location:18 → 1196
      PLN00192; aldehyde oxidase

    4. XM_015789115.3 → XP_015644601.1  probable aldehyde oxidase 4 isoform X4

      UniProtKB/TrEMBL
      B9FWN2
      Conserved Domains (6) summary
      TIGR02963
      Location:18 → 549
      xanthine_xdhA; xanthine dehydrogenase, small subunit
      pfam00941
      Location:250 → 432
      FAD_binding_5; FAD binding domain in molybdopterin dehydrogenase
      pfam01315
      Location:610 → 717
      Ald_Xan_dh_C; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
      pfam01799
      Location:101 → 186
      Fer2_2; [2Fe-2S] binding domain
      pfam02738
      Location:745 → 1202
      Ald_Xan_dh_C2; Molybdopterin-binding domain of aldehyde dehydrogenase
      pfam03450
      Location:446 → 550
      CO_deh_flav_C; CO dehydrogenase flavoprotein C-terminal domain

    5. XM_066311966.1 → XP_066168063.1  probable aldehyde oxidase 4 isoform X1

      UniProtKB/TrEMBL
      B9FWN2

    6. XM_066311969.1 → XP_066168066.1  probable aldehyde oxidase 4 isoform X6

      UniProtKB/TrEMBL
      B9FWN2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q69R21.1 GenPept UniProtKB/Swiss-Prot:Q69R21

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