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    LOC4332715 ricin B-like lectin R40C1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332715, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4332715
    Gene description
    ricin B-like lectin R40C1
    Locus tag
    OSNPB_030327600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    R40C1; Osr40c1
    Expression
    Broad expression in mature seeds (RPKM 128.0), flower buds (RPKM 114.9) and 6 other tissues See more
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    Genomic context

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    See LOC4332715 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (11957618..11959772, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene U11/U12 small nuclear ribonucleoprotein 65 kDa protein Neighboring gene NAC domain-containing protein 92 Neighboring gene uncharacterized LOC112938291 Neighboring gene NAC transcription factor 47

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    ricin B-like lectin R40C1
    Names
    LOC_Os03g21040
    OSJNBb0014I10.3
    Os03g0327600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417638.1 → NP_001404567.1  ricin B-like lectin R40C1

      Status: VALIDATED

      Source sequence(s)
      AU166527, CI063302, CI252101, CI344592, CI608563, CI742046
      UniProtKB/Swiss-Prot
      Q10M12, Q40705, Q8H7M3
      UniProtKB/TrEMBL
      A2XG88

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      11957618..11959772 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776394.2 → XP_015631880.1  ricin B-like lectin R40C1

      UniProtKB/Swiss-Prot
      Q10M12
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10M12.1 GenPept UniProtKB/Swiss-Prot:Q10M12

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