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    LOC4345374 uncharacterized LOC4345374 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345374, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345374
    Gene description
    uncharacterized LOC4345374
    Locus tag
    OSNPB_080360000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1014_E02.13
    Expression
    Ubiquitous expression in flower buds (RPKM 4.9), flowers (RPKM 4.1) and 6 other tissues See more
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    Genomic context

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    See LOC4345374 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (16710052..16711242)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (16581294..16582528)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene 30S ribosomal protein S17 Neighboring gene uncharacterized LOC4345373 Neighboring gene chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like Neighboring gene protein SAR DEFICIENT 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized LOC4345374
    Names
    Os08g0360000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422544.1 → NP_001409473.1  uncharacterized LOC4345374

      Status: VALIDATED

      Source sequence(s)
      AK111240, CI236779
      UniProtKB/TrEMBL
      A0A0P0XF42, B8BA16, B9G0J3, Q6YYA4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      16710052..16711242
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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