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    LOC4339885 ent-kaurenoic acid oxidase-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339885, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4339885
    Gene description
    ent-kaurenoic acid oxidase-like
    Locus tag
    OSNPB_060110000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    KAO; RPE1; OsKAO; CYP88A5
    Expression
    Biased expression in flowers (RPKM 111.3), flower buds (RPKM 19.9) and 1 other tissue See more
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    Genomic context

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    See LOC4339885 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (580666..586450)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281213 Neighboring gene uncharacterized LOC107281214 Neighboring gene eyes absent homolog Neighboring gene late embryogenesis abundant protein 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Rice tillering dwarf mutant dwarf3 has increased leaf longevity during darkness-induced senescence or hydrogen peroxide-induced cell death. Yan H, et al. Genes Genet Syst, 2007 Aug. PMID 17895586
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. We found that darkness-induced senescence or H(2)O(2)-induced cell death in the third leaf was delayed by 1-3 d compared to that in its reference line.
      Title: Rice tillering dwarf mutant dwarf3 has increased leaf longevity during darkness-induced senescence or hydrogen peroxide-induced cell death.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ent-kaurenoic acid monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brassinosteroid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in brassinosteroid homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sterol metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ent-kaurenoic acid oxidase
    Names
    Cytochrome P450 88A5
    LOC_Os06g02019
    OSJNBa0004I20.18
    Os06g0110000
    P0514G12.42
    Protein REDUCED POLLEN ELONGATION 1
    cytochrome P450 88A1
    putative cytochrome P450 DWARF3
    XP_015643774.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420984.1 → NP_001407913.1  ent-kaurenoic acid oxidase

      Status: VALIDATED

      Source sequence(s)
      CB654628, CB674924, CI128682, CI141026, CI274517, CI587317, CI589999
      UniProtKB/Swiss-Prot
      D0PQ37, Q5VRM7
      UniProtKB/TrEMBL
      B8AGM0

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      580666..586450
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788288.2 → XP_015643774.1  ent-kaurenoic acid oxidase

      UniProtKB/Swiss-Prot
      Q5VRM7
      Conserved Domains (1) summary
      PLN02302
      Location:36 → 505
      PLN02302; ent-kaurenoic acid oxidase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5VRM7.1 GenPept UniProtKB/Swiss-Prot:Q5VRM7

    Gene LinkOut

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