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    LOC4333181 pyruvate, phosphate dikinase 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333181, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4333181
    Gene description
    pyruvate, phosphate dikinase 2-like
    Locus tag
    OSNPB_030432100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CPDK2; PPDK2; OsJ_010907
    Expression
    Biased expression in mature seeds (RPKM 73.5), milk grains (RPKM 23.7) and 1 other tissue See more
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    Genomic context

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    See LOC4333181 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (18610364..18617341, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (18153168..18160124, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9269925 Neighboring gene uncharacterized LOC107276903 Neighboring gene uncharacterized LOC107280210 Neighboring gene uncharacterized LOC107278002

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. White-core endosperm floury endosperm-4 in rice is generated by knockout mutations in the C-type pyruvate orthophosphate dikinase gene (OsPPDKB). Kang HG, et al. Plant J, 2005 Jun. PMID 15941402
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The isolation and characterization of mutant endosperm phenotypes associated with mutations at the site of this gene are reported.
      Title: White-core endosperm floury endosperm-4 in rice is generated by knockout mutations in the C-type pyruvate orthophosphate dikinase gene (OsPPDKB).
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyruvate, phosphate dikinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pyruvate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pyruvate, phosphate dikinase 2
    Names
    LOC_Os03g31750
    OSJNBa0036E17.10
    Pyruvate, orthophosphate dikinase 2
    NP_001405261.1
    NP_001405262.1
    XP_066164253.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001418332.1 → NP_001405261.1  pyruvate, phosphate dikinase 2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AU068072, CB643566, CB647736, CB649190, CF305840, CI191174, CI566921, EX450548
      UniProtKB/Swiss-Prot
      Q0DQZ4, Q10J68, Q75KR1
      UniProtKB/TrEMBL
      A2XIA2

    2. NM_001418333.1 → NP_001405262.1  pyruvate, phosphate dikinase 2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AU068072, CB643566, CB647736, CF305840, CI191174, EX450548
      UniProtKB/TrEMBL
      A2XIA2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      18610364..18617341 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066308156.1 → XP_066164253.1  pyruvate, phosphate dikinase 2 isoform X1

      UniProtKB/TrEMBL
      A2XIA2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q75KR1.1 GenPept UniProtKB/Swiss-Prot:Q75KR1

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