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    LOC4340743 LRR receptor kinase SERL2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340743, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4340743
    Gene description
    LRR receptor kinase SERL2-like
    Locus tag
    OSNPB_060274500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SERL2; BAK1-7; OsSERL2; OsBAK1-7
    Expression
    Broad expression in leaves before flowering (RPKM 13.3), roots before flowering (RPKM 9.9) and 5 other tissues See more
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    Genomic context

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    See LOC4340743 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (9491963..9499798)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (9315648..9323935)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene H/ACA ribonucleoprotein complex subunit 2-like protein Neighboring gene LRR receptor kinase SERL2-like Neighboring gene peroxidase 11 Neighboring gene zinc finger protein HD1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lRR receptor kinase SERL2
    Names
    BRI1-associated receptor kinase 1 homolog 7
    LOC_Os06g16330
    LRR receptor kinase SERL2
    P0038C05.17
    P0676F10.28
    Somatic embryogenesis receptor kinase-like 2
    protein NSP-INTERACTING KINASE 1
    putative somatic embryogenesis protein kinase 1
    NP_001408464.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421535.1 → NP_001408464.1  lRR receptor kinase SERL2 precursor

      Status: VALIDATED

      Source sequence(s)
      AK066417, AU056335, CI636148
      UniProtKB/Swiss-Prot
      Q9FP13
      UniProtKB/TrEMBL
      A3BAL8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      9491963..9499798
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FP13.1 GenPept UniProtKB/Swiss-Prot:Q9FP13

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