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    LOC4336218 uncharacterized membrane protein YuiD [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336218, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4336218
    Gene description
    uncharacterized membrane protein YuiD
    Locus tag
    OSNPB_040486900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 10.8), mature seeds (RPKM 8.1) and 6 other tissues See more
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    Genomic context

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    See LOC4336218 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24321173..24325772)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic-like Neighboring gene ATP-dependent DNA helicase Q-like 5 Neighboring gene malate synthase-like Neighboring gene uncharacterized LOC112938617 Neighboring gene uncharacterized LOC4336219

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized membrane protein YuiD; uncharacterized protein LOC4336218
    Names
    Os04g0486900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001424247.1 → NP_001411176.1  uncharacterized membrane protein YuiD

      Status: VALIDATED

      Source sequence(s)
      AK109531, CA755204, CI210781, CI454849
      UniProtKB/TrEMBL
      A0A0N7KJ96, B8AVT4, B9FFT8, J3JRU8, Q7FAB1

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      24321173..24325772
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780417.2 → XP_015635903.1  uncharacterized protein LOC4336218

      Conserved Domains (1) summary
      pfam02681
      Location:23 → 142
      DUF212; Divergent PAP2 family
    Nucleotide Protein
    Heading Accession and Version

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