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    LOC4330633 mediator of RNA polymerase II transcription subunit 23 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330633, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330633
    Gene description
    mediator of RNA polymerase II transcription subunit 23
    Locus tag
    OSNPB_020732700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4330633 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (31037066..31048428, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30542192..30553586, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor-like protein 8c Neighboring gene MYB-like transcription factor ODO1 Neighboring gene GDSL esterase/lipase At5g37690 Neighboring gene APO protein 2, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in positive regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mediator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mediator of RNA polymerase II transcription subunit 23
    Names
    Os02g0732700
    P0643A10.26

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      31037066..31048428 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769629.3 → XP_015625115.1  mediator of RNA polymerase II transcription subunit 23 isoform X2

      UniProtKB/TrEMBL
      B8AI23
      Conserved Domains (1) summary
      pfam11573
      Location:761 → 1528
      Med23; Mediator complex subunit 23

    2. XM_015769628.3 → XP_015625114.1  mediator of RNA polymerase II transcription subunit 23 isoform X1

      UniProtKB/TrEMBL
      B8AI23, B9F2K2, Q6Z2J8
      Conserved Domains (1) summary
      pfam11573
      Location:745 → 1337
      Med23; Mediator complex subunit 23
    Nucleotide Protein
    Heading Accession and Version

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