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    LOC9266816 uncharacterized LOC9266816 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266816, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC9266816
    Gene description
    uncharacterized LOC9266816
    Locus tag
    OSNPB_060329200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots after flowering (RPKM 4.1), roots before flowering (RPKM 3.3) and 5 other tissues See more
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    Genomic context

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    See LOC9266816 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (13175562..13185497, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (12991013..13001037, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 89A2 Neighboring gene uncharacterized LOC136356951 Neighboring gene uncharacterized LOC4340917 Neighboring gene uncharacterized LOC9271528

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC9266816
    Names
    Os06g0329200
    replication factor A protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      13175562..13185497 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788832.3 → XP_015644318.1  uncharacterized protein LOC9266816 isoform X4

      Conserved Domains (2) summary
      cd04480
      Location:81 → 167
      RPA1_DBD_A_like; RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ...
      cd04481
      Location:203 → 309
      RPA1_DBD_B_like; RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ...

    2. XM_015788834.3 → XP_015644320.1  uncharacterized protein LOC9266816 isoform X5

      Conserved Domains (2) summary
      cd04480
      Location:81 → 167
      RPA1_DBD_A_like; RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ...
      cd04481
      Location:203 → 310
      RPA1_DBD_B_like; RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ...

    3. XM_066311638.1 → XP_066167735.1  uncharacterized protein LOC9266816 isoform X2

    4. XM_066311640.1 → XP_066167737.1  uncharacterized protein LOC9266816 isoform X3

    5. XM_066311639.1 → XP_066167736.1  uncharacterized protein LOC9266816 isoform X2

    6. XM_066311637.1 → XP_066167734.1  uncharacterized protein LOC9266816 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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