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    LOC4352779 cationic amino acid transporter 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352779, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC4352779
    Gene description
    cationic amino acid transporter 1
    Locus tag
    OSNPB_120613100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 10.9), leaves before flowering (RPKM 10.3) and 6 other tissues See more
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    Genomic context

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    See LOC4352779 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (25960564..25976067, complement)

    Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein HOX33-like Neighboring gene nuclear transcription factor Y subunit A-7 Neighboring gene BTB/POZ domain-containing protein At1g30440 Neighboring gene single myb histone 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-glutamate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables L-lysine transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K4 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amino acid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Set1C/COMPASS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cationic amino acid transporter 1; histone-lysine N-methyltransferase ATXR7
    Names
    Os12g0613100
    Os12g0613200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

      Range
      25960564..25976067 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026021771.1 → XP_025877556.1  cationic amino acid transporter 1 isoform X3

      UniProtKB/TrEMBL
      A0A8J8XT78, B9GE93, Q2QM92
      Conserved Domains (1) summary
      TIGR00906
      Location:72 → 575
      2A0303; cationic amino acid transport permease

    2. XM_026021767.1 → XP_025877552.1  histone-lysine N-methyltransferase ATXR7 isoform X1

      UniProtKB/TrEMBL
      B9GE94, Q0ILY4, Q2QM91
      Conserved Domains (1) summary
      cd19169
      Location:1061 → 1208
      SET_SETD1; SET domain (including post-SET domain) found in SET domain-containing protein 1 (SETD1) and similar proteins

    3. XM_026021761.1 → XP_025877546.1  histone-lysine N-methyltransferase ATXR7 isoform X1

      UniProtKB/TrEMBL
      B9GE94, Q0ILY4, Q2QM91
      Conserved Domains (1) summary
      cd19169
      Location:1061 → 1208
      SET_SETD1; SET domain (including post-SET domain) found in SET domain-containing protein 1 (SETD1) and similar proteins

    4. XM_026021768.1 → XP_025877553.1  histone-lysine N-methyltransferase ATXR7 isoform X1

      UniProtKB/TrEMBL
      B9GE94, Q0ILY4, Q2QM91
      Conserved Domains (1) summary
      cd19169
      Location:1061 → 1208
      SET_SETD1; SET domain (including post-SET domain) found in SET domain-containing protein 1 (SETD1) and similar proteins

    5. XM_026021762.1 → XP_025877547.1  histone-lysine N-methyltransferase ATXR7 isoform X1

      UniProtKB/TrEMBL
      B9GE94, Q0ILY4, Q2QM91
      Conserved Domains (1) summary
      cd19169
      Location:1061 → 1208
      SET_SETD1; SET domain (including post-SET domain) found in SET domain-containing protein 1 (SETD1) and similar proteins

    6. XM_026021770.1 → XP_025877555.1  histone-lysine N-methyltransferase ATXR7 isoform X2

      UniProtKB/TrEMBL
      B9GE94
      Conserved Domains (2) summary
      smart00317
      Location:874 → 997
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      smart00508
      Location:997 → 1013
      PostSET; Cysteine-rich motif following a subset of SET domains

    7. XM_026021769.1 → XP_025877554.1  histone-lysine N-methyltransferase ATXR7 isoform X1

      UniProtKB/TrEMBL
      B9GE94, Q0ILY4, Q2QM91
      Conserved Domains (1) summary
      cd19169
      Location:1061 → 1208
      SET_SETD1; SET domain (including post-SET domain) found in SET domain-containing protein 1 (SETD1) and similar proteins

    8. XM_026021765.1 → XP_025877550.1  histone-lysine N-methyltransferase ATXR7 isoform X1

      UniProtKB/TrEMBL
      B9GE94, Q0ILY4, Q2QM91
      Conserved Domains (1) summary
      cd19169
      Location:1061 → 1208
      SET_SETD1; SET domain (including post-SET domain) found in SET domain-containing protein 1 (SETD1) and similar proteins

    9. XM_026021764.1 → XP_025877549.1  histone-lysine N-methyltransferase ATXR7 isoform X1

      UniProtKB/TrEMBL
      B9GE94, Q0ILY4, Q2QM91
      Conserved Domains (1) summary
      cd19169
      Location:1061 → 1208
      SET_SETD1; SET domain (including post-SET domain) found in SET domain-containing protein 1 (SETD1) and similar proteins

    10. XM_026021766.1 → XP_025877551.1  histone-lysine N-methyltransferase ATXR7 isoform X1

      UniProtKB/TrEMBL
      B9GE94, Q0ILY4, Q2QM91
      Conserved Domains (1) summary
      cd19169
      Location:1061 → 1208
      SET_SETD1; SET domain (including post-SET domain) found in SET domain-containing protein 1 (SETD1) and similar proteins

    11. XM_026021763.1 → XP_025877548.1  histone-lysine N-methyltransferase ATXR7 isoform X1

      UniProtKB/TrEMBL
      B9GE94, Q0ILY4, Q2QM91
      Conserved Domains (1) summary
      cd19169
      Location:1061 → 1208
      SET_SETD1; SET domain (including post-SET domain) found in SET domain-containing protein 1 (SETD1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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