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    LOC4337317 uncharacterized LOC4337317 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337317, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4337317
    Gene description
    uncharacterized LOC4337317
    Locus tag
    OSNPB_040665500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 43.6), leaves after flowering (RPKM 41.7) and 6 other tissues See more
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    Genomic context

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    See LOC4337317 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33968610..33972536)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene U5 spliceosomal RNA Neighboring gene cell division protein FtsZ homolog 1, chloroplastic Neighboring gene uncharacterized LOC4337318 Neighboring gene uncharacterized LOC9269403

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4337317
    Names
    Os04g0665500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      33968610..33972536
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780789.1 → XP_015636275.1  uncharacterized protein LOC4337317

      UniProtKB/TrEMBL
      A0A0P0WG50, A3AYD1
      Conserved Domains (1) summary
      pfam02201
      Location:208 → 280
      SWIB; SWIB/MDM2 domain
    Nucleotide Protein
    Heading Accession and Version

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