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    LOC4330677 GDSL esterase/lipase At1g71250 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330677, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4330677
    Gene description
    GDSL esterase/lipase At1g71250
    Locus tag
    OSNPB_020740400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in milk grains (RPKM 3.5), flowers (RPKM 1.8) and 2 other tissues See more
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    Genomic context

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    See LOC4330677 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30965648..30967620, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene TORTIFOLIA1-like protein 3 Neighboring gene probable 26S proteasome regulatory subunit 10B Neighboring gene uncharacterized LOC4330678 Neighboring gene uncharacterized LOC4330679

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GDSL esterase/lipase At1g71250
    Names
    Os02g0740400
    P0516G10.12-1
    P0516G10.12-2
    putative proline-rich protein APG

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      30965648..30967620 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768346.2 → XP_015623832.1  GDSL esterase/lipase At1g71250

      UniProtKB/TrEMBL
      A0A0N7KG26, A2X9G0, Q0DXQ2, Q6Z7T3
      Conserved Domains (1) summary
      cd01837
      Location:38 → 366
      SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...
    Nucleotide Protein
    Heading Accession and Version

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