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    LOC4330991 protein HEADING DATE REPRESSOR 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330991, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4330991
    Gene description
    protein HEADING DATE REPRESSOR 1-like
    Locus tag
    OSNPB_020793900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HDR1; OsJ_08697; OJ1249_F12.36
    Expression
    Ubiquitous expression in mature seeds (RPKM 52.5), roots before flowering (RPKM 28.6) and 6 other tissues See more
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    Genomic context

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    See LOC4330991 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (33734364..33737366, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene probable steroid-binding protein 3 Neighboring gene uncharacterized LOC9267161 Neighboring gene uncharacterized LOC4330992 Neighboring gene serine-rich adhesin for platelets

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of flower development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein HEADING DATE REPRESSOR 1
    Names
    OSNPB_020793900
    Os02g0793900
    P0700F06.24
    Protein HEADING DATE REPRESSOR 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416988.1 → NP_001403917.1  protein HEADING DATE REPRESSOR 1

      Status: VALIDATED

      Source sequence(s)
      AU182713, CI470564, CI483618, CI616780
      UniProtKB/Swiss-Prot
      B8AE37, Q6K678

    RNA

    1. NR_184404.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CI470564, CI616780, CI656416

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      33734364..33737366 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767084.2 → XP_015622570.1  protein HEADING DATE REPRESSOR 1

      UniProtKB/Swiss-Prot
      Q6K678
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6K678.1 GenPept UniProtKB/Swiss-Prot:Q6K678

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