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    LOC4344647 putative lipase YOR059C [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344647, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4344647
    Gene description
    putative lipase YOR059C
    Locus tag
    OSNPB_080143700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 10.3), flowers (RPKM 4.7) and 6 other tissues See more
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    Genomic context

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    See LOC4344647 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (2412285..2418698, complement)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene beta-glucuronosyltransferase GlcAT14B Neighboring gene phospholipase A1-Ibeta2, chloroplastic Neighboring gene uncharacterized LOC9271022 Neighboring gene transcription factor MYBS3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cellular lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative lipase YOR059C
    Names
    Os08g0143700
    P0025F03.21

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      2412285..2418698 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792962.2 → XP_015648448.1  putative lipase YOR059C

      UniProtKB/TrEMBL
      A0A0P0XC25, B8BAN1, B9FZ12, Q6ZDM1
      Conserved Domains (1) summary
      pfam05057
      Location:31 → 248
      DUF676; Putative serine esterase (DUF676)
    Nucleotide Protein
    Heading Accession and Version

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