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    LOC4343334 protein MAIN-LIKE 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343334, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343334
    Gene description
    protein MAIN-LIKE 1
    Locus tag
    OSNPB_070507500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 15.6), flowers (RPKM 9.4) and 1 other tissue See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (19498227..19502608, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (19271785..19276379, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein TPX2 Neighboring gene uncharacterized LOC4343333 Neighboring gene protein MAIN-LIKE 1 Neighboring gene transcription factor GTE11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in meristem development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in meristem maintenance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein MAIN-LIKE 1
    Names
    OSJNBb0062D12.132
    Os07g0507500
    serine/threonine phosphatase PP7-related-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      19498227..19502608 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792102.3 → XP_015647588.1  protein MAIN-LIKE 1 isoform X2

      UniProtKB/TrEMBL
      A0A0N7KNI1, Q8H3F8
      Conserved Domains (1) summary
      pfam10536
      Location:50 → 374
      PMD; Plant mobile domain

    2. XM_015792101.3 → XP_015647587.1  protein MAIN-LIKE 1 isoform X1

      Conserved Domains (1) summary
      pfam10536
      Location:63 → 387
      PMD; Plant mobile domain
    Nucleotide Protein
    Heading Accession and Version

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